Group leader
Prof Falk Hildebrand
Falk studies the ecology and evolution of microbial strains and develops computational methods for resolving them in metagenomic data.
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The Hildebrand Lab.
We bring together researchers with complementary interests in microbial ecology, computational biology and bioinformatics. We value ambitious ideas, clear communication, collegiality and sustainable ways of working.
A team built around good questions.
Postdoctoral research scientist
Dr Anthony Duncan
Anthony develops genome-resolved and unsupervised methods for prokaryotic and eukaryotic metagenomes, and studies microbial responses to diet.
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Postdoctoral research scientist
Dr Kaden Muffett
Kaden studies interactions among hosts, microorganisms and their environments, drawing on his background in cnidarian ecology.
Metagenomics research scientist
Dr Shijia Li
Shijia uses genome-scale metabolic models to study early-life gut communities and microbial responses to plant-based diets.
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Research scientist
Dr William Boulton
William develops genome-resolved methods for soil metagenomics, with current work on stable-isotope data and ammonia-oxidising archaea.
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Research scientist
Luke Benjamin Jones
Luke studies population-level microbial DNA methylation dynamics and their contribution to phenotypic divergence.
Project scientist
Dr Hajra Ashraf
Hajra studies fungal microbiomes, microbial persistence and interactions between hosts and microorganisms, informed by earlier work on autoimmune disease.
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Postgraduate researcher
Wing Suet Koon
Wing develops rapid strain-level metagenomic approaches for inflammatory bowel disease, including Oxford Nanopore sequencing.
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Postgraduate researcher
Nabina Shrestha
Nabina develops sequencing and bioinformatic approaches to detect and track low-abundance microorganisms, including pathogens.
Quadram profile ↗Former colleagues.
We are grateful to former colleagues whose ideas, methods and care helped shape the lab. This record spans research appointments, doctoral training and visiting placements; their contributions remain part of the group’s scientific record.
Project scientist
David Schneider
Developed methods for enriching and studying fungi in the rare microbiome.
PhD student
Klara Cerk
Studied evolutionary pressures shaping the human gut resistome.
PhD student
Ece Silan
Worked on bacterial enrichment methods and pangenomes of human gut communities.
Postdoc
Dr Rui Guan
Studied interactions between gut bacteria and their environment, and microbiome adaptation across generations.
Visiting PhD
Daisuke Suzuki
Investigated gut microbial evolution in colorectal cancer.
Postdoc
Dr Katarzyna Sidorczuk
Combined biotechnology and bioinformatics to study gut-microbiota evolution.
PhD student
Joachim Fritscher
Developed higher-resolution taxonomy and strain-level bioinformatic methods.
Postdoc
Dr Clémence Frioux
Applied systems biology and metabolic modelling to microbial communities.
Postdoc
Dr Ezgi Özkurt
Explored microbial transmission and interactions between hosts and microorganisms.
Postdoc
Dr Rebecca Ansorge
Studied strain diversity, symbioses and pangenomes in gut microbiomes.
Postdoc
Dr Falk Nagies
Investigated microbial evolution, horizontal gene transfer and population genetics.
Postdoc
Dr Duncan Ng
Studied the nasal microbiome and microbial antagonism against pathobionts.
Intern
Myeonghyun Yoou
Worked on associations between disease and the microbiome, using machine-learning approaches.
MSc by Research student
Ángela Del Castillo Izquierdo
Investigated microbial ecology and microbiome dynamics.
Intern
Abby Newman
Worked on amyloidogenic proteins in the gut microbiome and cognition.
Interested in working with us?
We welcome enquiries from prospective researchers, students, visiting scientists and collaborators whose questions connect with the lab’s work.
View opportunities